Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs6563508 chr13:37597960 T/C 0.000294 178 4.17 24.7 25.7 KM Plot
PCPG rs6569287 chr6:123124598 A/G 3.16E-6 178 24.85 28.42 8.67 KM Plot
PCPG rs6572267 chr14:22576148 C/T 4.77E-5 178 26.57 18.7 17.25 KM Plot
PCPG rs658071 chr3:53509107 C/T 0.00026 170 31.43 22.35 25.6 KM Plot
PCPG rs6584321 chr10:101487926 A/G 0 178 23.43 29.62 3.17 KM Plot
PCPG rs6588591 chr1:56402956 A/G 1.33E-5 171 25.47 26.27 15.8 KM Plot
PCPG rs6600160 chr16:1722385 C/G 0.000418 178 6.1 30.25 25 KM Plot
PCPG rs66514851 chr5:179465390 GAA/G 0.000232 177 24.1 29.95 14.83 KM Plot
PCPG rs66522275 chr2:242537393 CAA/C 9.14E-6 174 25.92 29.57 20.2 KM Plot
PCPG rs66534174 chr15:43109140 AT/A 2.3E-14 177 25.47 24.85 3.17 KM Plot
PCPG rs66536758 chr8:6725672 AG/A 8.16E-10 175 27.2 18.2 8.2 KM Plot
PCPG rs6657176 chr1:56328238 G/T 2.67E-6 173 25.92 24.5 15.6 KM Plot
PCPG rs6660000 chr1:56399554 G/C 4.49E-5 176 25.47 25.97 15.8 KM Plot
PCPG rs66696624 chr16:1724211 C/T 0 177 25.53 19.3 2.93 KM Plot
PCPG rs6670350 chr1:56391806 C/T 0.00024 178 15.6 25.97 25.53 KM Plot